List of research projects

Dynamics of nucleosomes and elongation complexes We apply molecular simulation methods to study the dynamics of nucleosomes and elongation complexes in collaboration with Laboratory of transcription regulation and replication headed by Prof. V....
Modulation of the function of voltage-gated potassium channels: Molecular Dynamics simulations. Potassium (K+) channels, originally identified as the molecular entities mediating flows of potassium ions across nerve membranes in action potential generation are now known in virtually all types...
Molecular modeling of ion transport process through bacterial potassium channel KcsA. The bacterial potassium channel KcsA which is simplified model of eucaryotic voltage-dependent potassium channels has been chosen as an object of investigation. The studying of KcsA structure and...
Free Energy Profiles Near Water-Vapor Interface Obtained Via MD Simulations Solvation of 13 neutral amino acid side chain analogs at water –vapor interface was studied by computing high precision free energy profiles of the molecules across the interface using molecular...
Computer Simulations of Self-assembling Nanofibers from Thiophene-Peptide Oligomers Polythiophenes are conductive polymers with outstanding semiconducting, optical, electroluminescent and processing properties making them a promising compound class for applications in organic...