1. Calculation of properties (including optical spectra) of the retinal-containing proteins;
2. Bacterial and archeal two-component sensor systems: understanding role of HAMP domains and clusterization in signal propagation;
3. Molecular dynamics of bc1-complex: Qo-Qi sites communication;
4. Molecular dynamics of antibacterial toxins: revealing of the membrane insertion process of trichogin and colicin A.